Package: magmaR 1.0.3
magmaR: R-Client for Interacting with the 'UCSF Data Library'
A client for interacting with 'magma', the data warehouse of the 'UCSF Data Library'. 'magmaR' includes functions for querying and downloading data from 'magma', in order to enable working with such data in R, as well as for uploading local data to 'magma'.
Authors:
magmaR_1.0.3.tar.gz
magmaR_1.0.3.zip(r-4.5)magmaR_1.0.3.zip(r-4.4)magmaR_1.0.3.zip(r-4.3)
magmaR_1.0.3.tgz(r-4.4-any)magmaR_1.0.3.tgz(r-4.3-any)
magmaR_1.0.3.tar.gz(r-4.5-noble)magmaR_1.0.3.tar.gz(r-4.4-noble)
magmaR_1.0.3.tgz(r-4.4-emscripten)magmaR_1.0.3.tgz(r-4.3-emscripten)
magmaR.pdf |magmaR.html✨
magmaR/json (API)
NEWS
| # Install 'magmaR' in R: |
| install.packages('magmaR', repos = c('https://dtm2451.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 10 months agofrom:34022a7a70. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 20 2024 |
| R-4.5-win | OK | Nov 20 2024 |
| R-4.5-linux | OK | Nov 20 2024 |
| R-4.4-win | OK | Nov 20 2024 |
| R-4.4-mac | OK | Nov 20 2024 |
| R-4.3-win | OK | Nov 20 2024 |
| R-4.3-mac | OK | Nov 20 2024 |
Exports:magmaRsetqueryretrieveretrieveAttributesretrieveIdsretrieveJSONretrieveMatrixretrieveMetadataretrieveModelsretrieveProjectsretrieveTemplateupdateFromDFupdateMatrixupdateValues
Dependencies:crulcurlhttpcodejsonlitemimeR6Rcpptriebeardurltools
Downloading data from magma with the R-client magmaR
Rendered fromDownload.Rmdusingknitr::rmarkdownon Nov 20 2024.Last update: 2024-01-25
Started: 2021-04-29
Uploading data to magma with the R-client magmaR
Rendered fromUpload.Rmdusingknitr::rmarkdownon Nov 20 2024.Last update: 2024-01-25
Started: 2021-04-29
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Starting out and working with different Etna environments | authentication-and-environments |
| Set up your magma environment and authentication | magmaRset |
| Search-like function that can obtain linked data from distinct models. | query |
| Download data from magma as a tsv, and convert to a data.frame | retrieve |
| Helper functions that utilize special cases of magma /retrieve | retrieveAttributes retrieveIds retrieveModels retrieveTemplate retrieve_SpecialCases |
| Download data from magma as a json, and convert to a list | retrieveJSON |
| Download data from magma that is stored as a matrix | retrieveMatrix |
| Download data from magma of one model, but transformed into the shape of a different model's records. | retrieveMetadata |
| Helper function that retrieves all the projectName options which a user has access to, from janus. | retrieveProjects |
| Easier to use wrapper of 'updateValues' | updateFromDF |
| A matrix-specific wrapper of 'updateValues' | updateMatrix |
| Analogous to the '/update' function of magma | updateValues |
